MmuEX6071586 @ mm9
Exon Skipping
Gene
ENSMUSG00000033860 | Fgg
Description
fibrinogen gamma chain [Source:MGI Symbol;Acc:MGI:95526]
Coordinates
chr3:82816686-82818975:+
Coord C1 exon
chr3:82816686-82816963
Coord A exon
chr3:82818060-82818229
Coord C2 exon
chr3:82818757-82818975
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTGCCTCTGGCTCCTTGCAGGTG
3' ss Score
11.3
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CACTGCGGACTATGCCATGTTCAGGGTGGGTCCCGAGTCTGACAAATACCGCCTGACCTATGCCTACTTCATTGGTGGAGATGCCGGGGATGCCTTCGACGGCTACGATTTCGGCGATGACCCCAGTGACAAGTTTTTCACATCCCACAACGGCATGCAGTTCAGTACCTGGGACAACGACAACGATAAGTTTGAAGGCAACTGTGCGGAACAGGATGGATCCGGCTGGTGGATGAACAAATGTCACGCAGGCCACCTCAATGGAGTTTATCACCAAG
Seq A exon
GTGGTACTTACTCAAAATCATCTACTACTAATGGTTTCGACGACGGCATTATTTGGGCGACCTGGAAAAGCCGCTGGTATTCTATGAAGGAAACCACCATGAAGATAATTCCCTTCAACAGACTCTCCATCGGAGAAGGACAGCAGCATCACATGGGGGGATCCAAACAG
Seq C2 exon
GCTGGAGACGTTTAAAGAACATTTCAAAGCTGGTTTGCTTTTTTAAAGGACTTTATCCAAGCAGAGAACTATACTATTTTTCCTATGGGACAATGGACTTTCAGGACCTCACTTCATTTTCAGAGTTAATGGGATCCATGGTGCAAACTCCATTAGCAGTTTTATGCTGGCGATAATTTATCTACGTGCATTGCAATAAACATTTCGTTTCCTAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033860-'7-10,'7-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.188 C2=1.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(38.6=100)
A:
PF0014713=Fibrinogen_C=PD(15.8=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCACATCCCACAACGGCA
R:
GGTCCTGAAAGTCCATTGTCCC
Band lengths:
252-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: