MmuEX6071586 @ mm10
Exon Skipping
Gene
ENSMUSG00000033860 | Fgg
Description
fibrinogen gamma chain [Source:MGI Symbol;Acc:MGI:95526]
Coordinates
chr3:83012764-83015049:+
Coord C1 exon
chr3:83012764-83013041
Coord A exon
chr3:83014138-83014307
Coord C2 exon
chr3:83014835-83015049
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTGCCTCTGGCTCCTTGCAGGTG
3' ss Score
11.3
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CACTGCGGACTATGCCATGTTCAGGGTGGGTCCCGAGTCTGACAAATACCGCCTGACCTATGCCTACTTCATTGGTGGAGATGCCGGGGATGCCTTCGACGGCTACGATTTCGGCGATGACCCCAGTGACAAGTTTTTCACATCCCACAACGGCATGCAGTTCAGTACCTGGGACAACGACAACGATAAGTTTGAAGGCAACTGTGCGGAACAGGATGGATCCGGCTGGTGGATGAACAAATGTCACGCAGGCCACCTCAATGGAGTTTATCACCAAG
Seq A exon
GTGGTACTTACTCAAAATCATCTACTACTAATGGTTTCGACGACGGCATTATTTGGGCGACCTGGAAAAGCCGCTGGTATTCTATGAAGGAAACCACCATGAAGATAATTCCCTTCAACAGACTCTCCATCGGAGAAGGACAGCAGCATCACATGGGGGGATCCAAACAG
Seq C2 exon
GCTGGAGACGTTTAAAGAACATTTCAAAGCTGGTTTGCTTTTTTAAAGGACTTTATCCAAGCAGAGAACTATACTATTTTTCCTATGGGACAATGGACTTTCAGGACCTCACTTCATTTTCAGAGTTAATGGGATCCATGGTGCAAACTCCATTAGCAGTTTTATGCTGGCGATAATTTATCTACGTGCATTGCAATAAACATTTCGTTTCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033860-'3-20,'3-16,12-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.190 C2=1.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(38.6=100)
A:
PF0014713=Fibrinogen_C=PD(15.8=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCACATCCCACAACGGCA
R:
GGTCCTGAAAGTCCATTGTCCC
Band lengths:
252-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types