RnoEX0046086 @ rn6
Exon Skipping
Gene
ENSRNOG00000007645 | Kcnj9
Description
potassium voltage-gated channel subfamily J member 9 [Source:RGD Symbol;Acc:621440]
Coordinates
chr13:90703935-90708983:-
Coord C1 exon
chr13:90708883-90708983
Coord A exon
chr13:90706814-90707691
Coord C2 exon
chr13:90703935-90704260
Length
878 bp
Sequences
Splice sites
3' ss Seq
CTCGGCACACCTTTATTAAGACC
3' ss Score
0.25
5' ss Seq
CGGGTGCGG
5' ss Score
6.49
Exon sequences
Seq C1 exon
GGGGCCGTGAGAGCCTAGGGAAGGACCCTGGACATCCCGTCTCTCCGGGAAGATTTTAACACAGAGTGCTTCTCAGGGGGAAGAATTCGAAGCAAAACCAG
Seq A exon
ACCCCGCAGGATCCCCGCTGCGGCCGCCATGGCGCAGGAGAACGCCGCTTTCTCTCCCGGGTCGGAGGAGCCACCGCGGCGCCGCGGTCGCCAGCGCTACGTGGAGAAGGACGGGCGCTGCAACGTGCAGCAGGGCAACGTCCGCGAGACCTACCGCTACCTGACCGACCTGTTCACCACGCTGGTAGATCTGCAGTGGCGCCTCAGCCTGCTCTTCTTCGTGCTCGCCTACGCGCTCACCTGGCTCTTCTTCGGCGCCATCTGGTGGCTCATCGCCTACGGCCGCGGCGACCTGGAGCACCTGGAGGACACCGCGTGGACACCGTGCGTCAACAACCTCAACGGCTTCGTGGCCGCCTTCCTCTTCTCCATCGAGACAGAAACCACCATCGGCTATGGGCACCGTGTCATCACCGACCAGTGCCCCGAGGGCATCGTGCTGCTGCTGTTGCAAGCCATCCTGGGCTCCATGGTGAACGCTTTCATGGTGGGCTGCATGTTCGTCAAGATCTCGCAGCCCAACAAGCGCGCCGCCACGCTCGTCTTCTCCTCGCACGCCGTGGTGTCTCTGCGCGACGGGCGCCTCTGTCTCATGTTTCGCGTGGGGGACCTGCGATCCTCGCACATCGTCGAGGCCTCCATCCGCGCCAAGCTCATCCGCTCGCGCCAGACGCTCGAGGGCGAGTTCATCCCTCTGCACCAGACCGACCTCAGCGTGGGCTTCGACACGGGGGACGACCGCCTCTTCCTCGTCTCACCTCTCGTCATCAGCCATGAGATCGACGCCGCCAGCCCCTTCTGGGAGGCATCGCGCCGCGCCCTCGAGAGGGACGACTTCGAGATCGTAGTCATTCTCGAGGGCATGGTGGAAGCCACGG
Seq C2 exon
GAATGACGTGCCAAGCTCGAAGCTCGTACCTGGTAGACGAAGTGTTGTGGGGCCACCGATTCACATCCGTGCTCACCCTGGAGGACGGTTTCTATGAGGTGGACTACGCTAGCTTCCATGAAACCTTTGAGGTGCCCACACCCTCATGCAGTGCTCGGGAACTGGCAGAAGCTGCAGCCCGCCTTGACGCCCATCTCTACTGGTCCATCCCCAGCAGGCTGGATGAGAAGGTGGAGGAAGAAGGGGCTGGGGAGGGGGCAGGCGCAGGAGATGGAGCTGACAAGGAGCAAAATGGCTGCCTGCCACCCCCGGAGAGTGAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007645-'1-6,'1-3,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.053 C2=0.302
Domain overlap (PFAM):
C1:
NA
A:
PF0100715=IRK=PU(76.9=91.2)
C2:
PF0100715=IRK=PD(22.8=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGAGTGCTTCTCAGGGG
R:
GCAGCCATTTTGCTCCTTGTC
Band lengths:
342-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]