DreEX0005301 @ danRer10
Exon Skipping
Gene
ENSDARG00000058985 | KCNJ6
Description
potassium channel, inwardly rectifying subfamily J, member 6 [Source:HGNC Symbol;Acc:HGNC:6267]
Coordinates
chr10:121868-146686:-
Coord C1 exon
chr10:146525-146686
Coord A exon
chr10:134508-135432
Coord C2 exon
chr10:121868-125302
Length
925 bp
Sequences
Splice sites
3' ss Seq
AAGTATTTGTCTCCCTGCAGGCT
3' ss Score
9.52
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTCGGGATGGGAGGATGATGATGATGAGGGCTCTCCGGGTTTTTCTCCGGGAATAATGCGCGTCTTCTTCTCCATCACTGAAGACTGAAGCTCGACAGGATGAAGAACGACTGAGCGGACGGACGGACGGACGGATGGATGAATGAATGAACGCGCAGTCTG
Seq A exon
GCTCAGAATCTTCCAGAAGTCCAGATGGAGCAGGATGTCGAGAGCACCGTCACGGTTCGACAACCCAAGCTGCCCAAGCAGGCGCGGGACGACATCCCCAAACCGCTGCAGGAGCGGGAGCGCGCCAAGCAGAAGACCCAGCGCTACGTCCGCAAAGACGGCAAGTGCAACGTGCACCACGGAAACGTGCGGGAGACCTACCGCTACCTGACGGACATCTTCACCACGCTGGTGGACCTCAAGTGGAGGTTCAACCTGTTCATCTTCGTGCTGGTCTACACCGTCACCTGGCTGTTCTTCGGCTTCATGTGGTGGCTGATCGCCTACATTCGAGGAGATCTGGAGCACATCGGAGACAACCAGTGGACTCCCTGCGTCAACAACCTGAACGGCTTCGTGTCCGCATTCCTGTTCTCGATAGAGACTGAGACCACCATCGGCTACGGCCACCGCGTCATCACCGACAAGTGTCCGGAGGGCATCGTGCTGCTGCTGGTGCAGTCGGTGCTGGGCTCCATCGTCAACGCCTTCATGGTGGGCTGCATGTTCGTCAAGATCTCGCAGCCCAAGAAGCGCGCCGAGACGCTGGTCTTCTCCACCAACGCCGTCATCTCCATGCGGGACGGCCGGCTCTGCCTGATGTTCCGCGTGGGAGACCTCAGAAACTCGCACATCGTGGAGGCGTCCATTAGAGCCAAGCTGATCAAGTCCAAACAGACCAAGGAGGGCGAGTTCATCCCGCTCAATCAGACGGACATAAACGTGGGCTACGACACCGGAGACGACCGGCTCTTCCTGGTGTCTCCGCTCATCATCTGCCACGAGATCAACCAGCACAGCCCCTTCTGGGAGATCTCCAGAGAGCACATGGCCAAGGAGGAGCTGGAGATCGTGGTGATCCTGGAGGGCATGGTGGAGGCCACAG
Seq C2 exon
GCATGACGTGTCAGGCGCGCAGCTCATACGTGGCCAGCGAGATCAAGTGGGGTTACCGCTTCACGCCAGTGCTGACGCTGGAGGACGGCTTCTACGAGGTGGACTACAACAGCTTCCACGAGATCTACGAGACCAACACGCCCAGCTGCAGCGCGCGAGAGCTGGCCGAGATGACGGCGCGCGCCCGCCTGCCGCTCACCTGGTCGGTGGCCAGCAAACTGAGCCAGCTGGAGCCGCAGGAGCCGCCGGAGGAGCTGACGGAGAGGAACGGAGACGTCGCCAACATGGAGAGCGAGTCCAAAGTGTAGGAGGACGGGAGAATCTCTCCTGATCTCTGCGCCACTGCCGCCGCACCATTGGCTGGGCTCAGAGGTCAGAGGTCAGCTCAGGAATGCGCCCCGAGGCGGGCCGAGGTCACGGACGCCCCCATCACACGCACTTCTCTTTTTCTGGCTCCAGGGCGTGACGCAGGTGAACTGGCGGGCCACTGCATGGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058985_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.037 C2=0.265
Domain overlap (PFAM):
C1:
NA
A:
PF0100715=IRK=PU(77.3=86.0)
C2:
PF0100715=IRK=PD(22.4=72.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGACGGATGGATGAATG
R:
CCCGTCCTCCTACACTTTGGA
Band lengths:
355-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]