GgaEX1031317 @ galGal4
Exon Skipping
Gene
ENSGALG00000001181 | KCNJ5
Description
potassium channel, inwardly rectifying subfamily J, member 5 [Source:HGNC Symbol;Acc:HGNC:6266]
Coordinates
chr24:1092017-1109460:+
Coord C1 exon
chr24:1092017-1092187
Coord A exon
chr24:1098984-1099930
Coord C2 exon
chr24:1109114-1109460
Length
947 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTCCCCAACCCAGCCC
3' ss Score
6.79
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGGGAGGGAAGGAGGAGACGGCCCCGGGATCAGAAGACCACCACGGCTTGCTGGTGATGGCATGGATCGGCCGCTTCTCCAGCAGCTGCGCTCCCCGCCTCTCGGTGCGGTCACCGCCCGGCATCCCCGAAGTGCCACGGCACGAGACTGATGCAGAACCGCTCTCAGCAA
Seq A exon
CCCAGCCATGGCCAGAGATTCTAGGATCTTCATGAACCAGGACATGGACATCGGAGTTGCATCCAGAGAGCCTAAGAAGATTCCCAAACAGGCTCGGGATGACGTCCCCATTGCCACTGACCGAACCCGACTCATAACAGCAGAAGGTAAGAAGCCACGGCAGCGGTACATGGAGAAAAGTGGCAAGTGCAATGTGCACCATGGGAACGTTCAGGAAACCTACCGATACCTTAGTGACCTCTTCACTACACTGGTGGACCTCAAATGGCGTTTTAATCTTCTTGTCTTCACTATGGTCTATACCATCACTTGGTTGTTTTTTGGGTTCATATGGTGGCTCATTGCCTATATCCGGGGAGACCTGGACCACCTTGAAGATGAAAACTGGATCCCTTGTGTTGAAAATCTCAGTGGATTTGTTTCTGCGTTTCTCTTTTCTATTGAAACTGAGACAACAATTGGGTATGGCTACAGGGTTATAACTGAGAAGTGCCCAGAGGGCATTGTACTGCTCCTGATCCAGGCTATTCTGGGCTCCATAGTCAATGCGTTCATGGTGGGATGCATGTTTGTCAAGATCAGCCAACCAAAGAAGAGAGCTGAAACCCTCATGTTTTCTAACAATGCAGTGATTTCCATGAGGGATGAGAAGCTCTGTCTCATGTTTCGTGTTGGAGACCTCCGCAATTCCCACATTGTCGAGGCTTCCATTAGAGCCAAACTGATTAAGTCCAAACAGACCAAAGAGGGAGAGTTCATCCCCTTGAACCAAACGGACATCAATGTGGGATTTGACACTGGAGATGACAGATTGTTCCTGGTGTCACCTCTTATCATCTCACATGAAATCAACGAGAAAAGCCCCTTCTGGGAGATGTCCCGCACCCAGCTGGAGAAGGAAGAGTTTGAGATTGTGGTCATTCTGGAAGGAATGGTGGAAGCAACAG
Seq C2 exon
GGATGACTTGCCAGGCTCGCAGCTCCTACATGGACACAGAGGTGCTGTGGGGACATCGCTTCACTCCTGTCCTCACCCTGGAGAAGGATTTTTATGAAGTCGACTACAACAGCTTCCACAGCACTTACGAAACCAACACTCCTGTGTGCTGTGCCAAAGAGCTGGCCGAGTCCCGCCGGGAAGGGCATCTCCTCAGCAGTATCTCTAGTGCCACTGTCCTGGGCGGAGGCAGAGAAGCAGAGACAGTGAGAGGGGAGGAAGAGGAAGAGGAAGAAGACAGGGAGCCAGCAGCATTCAGTGGAGCCAATGGGACAGCGGGAGAGGTGAAAGAAGATCTGCCTGTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001181-'2-4,'2-1,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.013 C2=0.365
Domain overlap (PFAM):
C1:
NA
A:
PF0100715=IRK=PU(97.0=84.6),PF058997=Cupin_3=PU(59.3=10.5)
C2:
PF0100715=IRK=PD(21.9=62.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGTGATGGCATGGATC
R:
CCAGGACAGTGGCACTAGAGA
Band lengths:
346-1293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]