RnoEX0046083 @ rn6
Exon Skipping
Gene
ENSRNOG00000033796 | Kcnj5
Description
potassium voltage-gated channel subfamily J member 5 [Source:RGD Symbol;Acc:61971]
Coordinates
chr8:33433905-33463467:-
Coord C1 exon
chr8:33463237-33463467
Coord A exon
chr8:33441890-33442828
Coord C2 exon
chr8:33433905-33437543
Length
939 bp
Sequences
Splice sites
3' ss Seq
TTTAATCCACTGTATCTCAGCTA
3' ss Score
4.48
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CGGCTGCTCTCTCTAGATAGAAGGGCGAGGCAGACCGGTGAAGGGGCGGGAGGTTTACACGCCTCTGCTAGCTGGACCTGCGACACCAGAGTGGCTCAGGGCGGCTGTCGGTACGTAGGCAATGCCTGAGGCTATGGAATCCCCTGGAGAGCCCTGAGAGCCACACGCACCGCCTTGAAGGGATCGCCAGAAGTTAGCCCCAAGGGTTCAGAGAAGCTCTCTGCTCTACGA
Seq A exon
CTATGGCCGGTGATTCTAGGAATGCTATGAATCAAGACATGGAGATAGGAGTCACCTCCCAGGACCACAAGAAGATCCCCAAACAGGCTCGGGATTACATCCCCATTGCCACAGACCGCACTCGCCTGCTGCCGGAAGGCAAGAAGCCACGCCAGCGCTACATGGAGAAGACCGGCAAGTGTAACGTGCACCATGGCAATGTTCAGGAAACCTACCGCTACCTAAGTGACCTCTTCACCACCCTGGTGGACCTCAAATGGCGCTTCAACCTTCTGGTCTTCACCATGGTCTACACCATTACTTGGCTATTCTTTGGCTTCATCTGGTGGCTCATTGCTTATGTCCGAGGTGATCTGGACCACGTGGGTGACCAAGAGTGGATCCCTTGTGTTGAAAACCTTAGTGGCTTTGTGTCTGCTTTCCTGTTCTCCATTGAGACAGAAACAACCATTGGGTATGGCTTCAGAGTCATTACAGAGAAGTGTCCAGAGGGGATCATTCTCCTTCTAGTGCAGGCCATCCTGGGCTCTATTGTTAATGCCTTCATGGTGGGTTGCATGTTTGTAAAGATCAGCCAGCCAAAGAAGAGAGCAGAGACCCTCATGTTCTCCAACAATGCTGTCATCTCCATGCGGGATGAGAAGCTGTGCCTCATGTTCCGGGTAGGGGACCTCCGAAACTCCCATATCGTGGAGGCCTCCATCCGCGCCAAGCTTATCAAGTCCCGGCAGACCAAAGAAGGGGAATTCATCCCCTTGAACCAGACCGACATTAACGTGGGCTTTGACACTGGTGACGACCGCCTCTTCCTGGTGTCCCCCCTCATCATCTCCCATGAGATCAATGAGAAGAGCCCTTTCTGGGAGATGTCTCGTGCTCAACTGGAGCAGGAAGAGTTCGAGGTTGTGGTCATACTAGAAGGGATGGTAGAAGCCACAG
Seq C2 exon
GCATGACTTGCCAAGCACGGAGCTCTTACATGGATACAGAGGTGCTCTGGGGTCACCGATTCACACCAGTCCTCACCTTGGAAAAGGGCTTCTATGAGGTGGACTACAACACTTTCCACGACACCTATGAGACCAACACACCCAGCTGCTGTGCCAAGGAGCTGGCAGAAATGAAGAGGAATGGTCAGCTCCTCCAGTCCTTGCCCAGTCCTCCTTTGCTTGGGGGCTGCGCTGAGGCTGAGAAAGAAGCAGAGGCTGAGCACGATGAGGAGGAGGAACCCAATGGACTGAGTGTGTCCCGGGCAACAAGGGGCTCAATGTGAAGCCTGTGTGCTACCCAGAGCCTCTTCCTGTCAGACACCAAGGAGCCTGAGAGGCCAGAGAGGCCAATTAGTTGAGCAAGCTTTGTGGAGTCCCAGGAGTATGGGACTTCTACAAAGAGGAACAGTGTGGTGAGGCCTCACATCTCCTCCTCAGGGCCTCGGAGCAAGTGGCGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033796_MULTIEX1-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.019 C2=0.355
Domain overlap (PFAM):
C1:
NA
A:
PF0100715=IRK=PU(76.2=82.7)
C2:
PF0100715=IRK=PD(23.5=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGAAGGGATCGCCAGAAG
R:
TCCATTGGGTTCCTCCTCCTC
Band lengths:
346-1285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]