DreEX0040929 @ danRer10
Exon Skipping
Gene
ENSDARG00000061014 | kcnj5
Description
potassium inwardly-rectifying channel, subfamily J, member 5 [Source:ZFIN;Acc:ZDB-GENE-120215-97]
Coordinates
chr18:48613669-48645543:+
Coord C1 exon
chr18:48613669-48613753
Coord A exon
chr18:48625139-48626015
Coord C2 exon
chr18:48645382-48645543
Length
877 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTACCTCCAAACAGCAG
3' ss Score
8.26
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGGTTTGTAGTCAAAGCTGAGGATGGCAGGAGATTCTCGCGTCCACATGGACCACGACATGGAGATAGGAGTGACTCCAAGAGAG
Seq A exon
CAGGTGAAGAAACTCCCCAAACACCTGAGGGAATCCCAGATCCCCACAGACCGTACCCACCTCATCTCTGATCCGGTTAAGAAACCCCGTCAGCGCTACGTCCAGAAAGACGGCAAGTGCAACGTTCATCACGGAAACGTTAAAGAGACCTACCGTTATCTCAGCGACCTCTTCACGACACTAGTGGACTTACGATGGCGTCTCAGTTTCTTCATCTTCACCTTGGTCTACGTGGTCAACTGGCTGTTTTTTGGGTTTTTATGGTGGCTAATTGCACTGATACGAGGAGATCTTCTACACAGCGACGAGGAGGGCTGGACCCCCTGCGTTGAAAACCTCAACAGCTTTGTATCCGCTTTCCTGTTTTCCATCGAAACCGAGACCACTATTGGGTATGGCTATCGGGTGATCACGGAGAAGTGTCCGGAAGGGATAATACTTCTAATGGTGCAAGCCATATTGGGGTCGATTGTCAACGCCATGATGGTAGGGTGTATGTTTGTAAAGATTTCACAACCCAAGAACCGAGCAGAGACGTTGATGTTCTCCCACAATGCTGTGATCTCGGTGCGGGACAACAAGATGTGCCTGATGTTCAGGGTGGGCGACTTGAGGAATTCCCACATTGTGGAAGCGTCAATTCGGGCCAAACTCATCCGCTCGCAGCAGACCAAGGAGGGCGAGTTTATTCCGCTCAATCAGACAGACATCAACATTGGCTTCGACACAGGAGACGATCGCTTATTCTTGGTATCTCCTCTTATCATCTCACATGAGATCAACGAGAAGAGTCCTTTCTGGGAGATGTCGCGGGCACAGATGGAGAAGGAAGAGTTCGAGATTGTGGTCATCTTAGAAGGCATGGTTGAAGCTACAG
Seq C2 exon
GCATGACGTGTCAGGCGCGCAGCTCGTACTTGGACTCGGAGGTGCTGTGGGGCTTCCGCTTCACGCCGGTGCTTTCGCTGGAAAAGGGCTTCTACGAAGTCGACTACAACAACTTTCACGACATATACGAAACCAACACCCCGACCTGTAGCGCTAAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061014-'0-5,'0-3,1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF0100715=IRK=PU(82.7=88.4),PF145981=PAS_11=WD(100=30.7)
C2:
PF0100715=IRK=PD(16.9=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAAAGCTGAGGATGGCAG
R:
TTCTTTAGCGCTACAGGTCGG
Band lengths:
238-1115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]