RnoEX0046427 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39149688-39150867:+
Coord C1 exon
chr12:39149688-39149948
Coord A exon
chr12:39150164-39150277
Coord C2 exon
chr12:39150829-39150867
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCCACCCCCTTTAGGCC
3' ss Score
10.11
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
CAAAAGCGTGGCCCTGGCTTTAAGTATGCCTCCAACTTGCCTGGCTCCTTGCTCAAGGAGCAGAAGATGAACCGGGACAACAAGGAAGGGCAGGAGCCTGCCAAGCGGAGGAGTGAGTGTGAAGAGGCCCCCCGTCGCAGGTCAGACGAGCACCCCAAGAAGGTGCCTACAGATGGCATCCTCCGCCGAAAGTCTGACGATGTGCACCTGAGGAGGAAGCGGAAATACGAGAAGCCCCAAGAGCTGAGTGCACGCAAGCGA
Seq A exon
GCCTCGACGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGTCTCAGCCCTTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
Seq C2 exon
CTAAAACCTGGCAAAGAAGATAAGCTTCTCAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=0.921 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTTGCCTGGCTCCTTG
R:
AGCTTATCTTCTTTGCCAGGT
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]