HsaEX0033258 @ hg38
Exon Skipping
Gene
ENSG00000089094 | KDM2B
Description
lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr12:121442992-121444272:-
Coord C1 exon
chr12:121444012-121444272
Coord A exon
chr12:121443278-121443793
Coord C2 exon
chr12:121442992-121443030
Length
516 bp
Sequences
Splice sites
3' ss Seq
CCCACTCCACCCCCCTTTAGGCC
3' ss Score
9.09
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CAAAAGCGTGGCCCTGGCTTTAAGTACGCCTCCAACCTGCCCGGCTCCCTGCTCAAGGAGCAGAAGATGAACCGGGACAACAAGGAAGGGCAGGAACCTGCCAAGCGGAGGAGTGAGTGTGAGGAGGCGCCCCGGCGCAGGTCGGATGAGCACTCGAAGAAGGTGCCGCCGGACGGCCTTCTGCGCAGAAAGTCTGACGACGTGCACCTGAGGAAGAAGCGGAAATACGAGAAGCCCCAGGAGCTGAGTGGACGCAAGCGG
Seq A exon
GCCTCATCGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGCCTCAGCCCCTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAGGTGCTCCCACGACGCACGCCCTCCTGAGGCCCCGGGGACTGGCGAGTCCTGGGCTGTCCCCCACCCCACCCCGCTGGTCCTCCACCCCACTGCTGCCTCTCCTGAGGCTTCCCAGGTCTCGGCCCCAGATCTCTGGCTCGTGGTTCTGGCTTGGGGCCTGGGAAGCTGTCTGTGCCTAGAGCCTCTGTTGGTTGGGATGGAAGCTGTGAGTCCAGGGAACCTCTGAGGAGCCTGGTGGCCCTGCTCCACCCACGGGCCGTGCTGTCACCAGCCACAAGGTGGCGCCAGGAGTCTCTCCCAGCTCTAGCCATTCCTGCTGGGCCGGGGATTCCCACAGGGCTGTGCTCCAGAACTGGCTCCCAGAGCCGAGGATGATTTGAATGGGCGGCTGCACATCTCCAG
Seq C2 exon
CTCAAACCTGGCAAAGAAGATAAGCTTTTCAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089094_MULTIEX1-5/10=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=0.804 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000377069fB3534
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCGTGGCCCTGGCTTTA
R:
TTCCTGAAAAGCTTATCTTCTTTGCC
Band lengths:
294-810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development