HsaINT0085022 @ hg38
Intron Retention
Gene
ENSG00000089094 | KDM2B
Description
lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr12:121442992-121443793:-
Coord C1 exon
chr12:121443680-121443793
Coord A exon
chr12:121443031-121443679
Coord C2 exon
chr12:121442992-121443030
Length
649 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
TCCTTTCTTTTTCGTGACAGCTC
3' ss Score
10.25
Exon sequences
Seq C1 exon
GCCTCATCGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGCCTCAGCCCCTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
Seq A exon
GTGCTCCCACGACGCACGCCCTCCTGAGGCCCCGGGGACTGGCGAGTCCTGGGCTGTCCCCCACCCCACCCCGCTGGTCCTCCACCCCACTGCTGCCTCTCCTGAGGCTTCCCAGGTCTCGGCCCCAGATCTCTGGCTCGTGGTTCTGGCTTGGGGCCTGGGAAGCTGTCTGTGCCTAGAGCCTCTGTTGGTTGGGATGGAAGCTGTGAGTCCAGGGAACCTCTGAGGAGCCTGGTGGCCCTGCTCCACCCACGGGCCGTGCTGTCACCAGCCACAAGGTGGCGCCAGGAGTCTCTCCCAGCTCTAGCCATTCCTGCTGGGCCGGGGATTCCCACAGGGCTGTGCTCCAGAACTGGCTCCCAGAGCCGAGGATGATTTGAATGGGCGGCTGCACATCTCCAGGTCTGTGGGGTGGGAGGTCAGTTGGGTGGGAACAGTTCAACTGTACTCCTACTTCCAGCTTCTTCCTTGAAAGCTGCAGGCAGGGCTCGCCCGTCTGTCGGTCAGACGTGGAGATGGCATTTGTGGGGAAGGCCTCCCTCCAGCCCCTCCTCTGGAGACTGTGGACTCGTGGTGGGGTGGGGTGTCGAGGAGACCAAATCCCACGAGCCCGGGGAGCAAGCTCTGCGTCCTTTCTTTTTCGTGACAG
Seq C2 exon
CTCAAACCTGGCAAAGAAGATAAGCTTTTCAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089094:ENST00000377071:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENST00000377069fB3534
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development