RnoINT0078354 @ rn6
Intron Retention
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39150164-39150867:+
Coord C1 exon
chr12:39150164-39150277
Coord A exon
chr12:39150278-39150828
Coord C2 exon
chr12:39150829-39150867
Length
551 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
ACCCTTTCTTCCTATGACAGCTA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GCCTCGACGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGTCTCAGCCCTTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
Seq A exon
GTGCTCCCACGCCCCGCCCTCCTGAGGCCCTGGGGACTCTGGAGTCAGGCTGCCCTCCGCCCCACTCCCCACACCCTTGTCCATCGCTGCTGGGCTGCAGCCCGCCTGAGAGGCTGAGGTGGAGAGGCCTCTGGTGGTTGGGGAGGCTGCAGCTGGGAAGGTCCTGGCAGCCCTGCTTTGCTATGGGCCTTGCCATTAGTAGCCACAAGGTGGCGCCTGGAGAAGCTCCTGGCTTAGGCTTGACTAGGGGTGTCTCCTGCCTGGTCTCCAGAGCTCTGGGCTCCCTCAGCCATGACACTGCTGTTAGTAGGCAACTATCCTCTCTGATCTATTTCAGGTGGGAGGTCAGCTGGGCGGGAACAATTGGCCATCTTCCATTATTTCTGTCATTCTCTGGGAGAGCATCAGGCTGTCAGATGTAAAGTCATGGCTTTATAGGAAGATGGCCTCCTAGCCCTTACTCAAGAGACTGGGCTTGTGGGGTGGGAGTGTAAGGGGGACCATTTTCTCCAGTCCAGGAGCAAGCTCTGTACCCTTTCTTCCTATGACAG
Seq C2 exon
CTAAAACCTGGCAAAGAAGATAAGCTTCTCAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702:ENSRNOT00000044071:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]