BtaINT0080154 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:56009219-56010051:+
Coord C1 exon
chr17:56009219-56009332
Coord A exon
chr17:56009333-56010012
Coord C2 exon
chr17:56010013-56010051
Length
680 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
TCTTTTCTTTCCCATGACAGCTA
3' ss Score
9.61
Exon sequences
Seq C1 exon
GCCTCGACGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGCCTCAGCCCCTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
Seq A exon
GTGCTCCCACGTCGCCCCGCCGCCCCGCCCCAGGCCCCCCGGGACCCCGAGTCCCTGGCACCCGCGCCCCCCACGCCCCACTCCCACCCCGCCCCCGCCCCACTGGTCCTCGAACCCACTGCCGCAGACGCTCCCAGACACCGTTTCACCGTAACTTCCCAGGCCCCAGCCCCGGGTCGCCGGCTCATGGTTCCGGCGTGGGGCCTGGGAAGCTGAAGCTGCCGCAGGGAAGCCCTGTGGATCTGGGGAACCTCGGAGGATCCTGGCGGCCCTGCTCCACCCACCGGCCCTTCCAGCATCAGCCACGAGGTGGCGCCCGGTTGTCTTCTCCCAGCTTTAGCCATTAAGGCTCGGCAGGGAAATCCAGCAGACCCTGCCTCCAGGCCTGGCTCCCAGAGCCAAGTCCGACCTGAATGGGCGACTGCGGATCCCTGGGTCTGTCCAGGGGTGGGAGGTCAAGTGGGTGGGGATAGTTCCATCAGCCCCCGCCACTTCCAGATTTTCCTTAAAGCCAGCAGGCAGGGCCCACCCAGAGTGGAGGAGACGGGGGTTTGTTGGGAAGGTGACCCCCCAGCCTCTGCTCTGTAGAGACTGTGGATTCTTGGTGGGGCTGGGTGTGGAGGGGACCAAATCCCGCGACCCCTGGGAGCAAGCTTTGCATCTTTTCTTTCCCATGACAG
Seq C2 exon
CTAAAACCTGGCAAAGAAGATAAGCTTTTCAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328:ENSBTAT00000003003:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development