BtaEX0018976 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:56008768-56010051:+
Coord C1 exon
chr17:56008768-56009028
Coord A exon
chr17:56009219-56009332
Coord C2 exon
chr17:56010013-56010051
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCCCACCCCTTTAGGCC
3' ss Score
10.93
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
CAAAAGCGTGGCCCTGGCTTTAAGTACGCCTCCAACCTGCCTGGCTCCCTGCTCAAGGAGCAGAAGATGAACCGGGACAACAAGGAAGGGCAGGAGCCTGCCAAGCGGAGGAGTGAGTGTGAGGAGGCGCCCCGGCGCAGGTCCGACGAGCACCCCAAGAAGGTGCCCCCCGACGGCATCCTGCGCCGAAAGTCGGACGACGTGCACCTGAGGCGGAAGCGGAAATACGAGAAGCCCCAGGAGCTGAGTGGACGCAAGCGA
Seq A exon
GCCTCGACGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGCCTCAGCCCCTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
Seq C2 exon
CTAAAACCTGGCAAAGAAGATAAGCTTTTCAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.921 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGCAGAAGATGAACCGG
R:
TCCTGAAAAGCTTATCTTCTTTGCC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development