HsaINT0085022 @ hg19
Intron Retention
Gene
ENSG00000089094 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:13610]
Coordinates
chr12:121880795-121881596:-
Coord C1 exon
chr12:121881483-121881596
Coord A exon
chr12:121880834-121881482
Coord C2 exon
chr12:121880795-121880833
Length
649 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
TCCTTTCTTTTTCGTGACAGCTC
3' ss Score
10.25
Exon sequences
Seq C1 exon
GCCTCATCGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGCCTCAGCCCCTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
Seq A exon
GTGCTCCCACGACGCACGCCCTCCTGAGGCCCCGGGGACTGGCGAGTCCTGGGCTGTCCCCCACCCCACCCCGCTGGTCCTCCACCCCACTGCTGCCTCTCCTGAGGCTTCCCAGGTCTCGGCCCCAGATCTCTGGCTCGTGGTTCTGGCTTGGGGCCTGGGAAGCTGTCTGTGCCTAGAGCCTCTGTTGGTTGGGATGGAAGCTGTGAGTCCAGGGAACCTCTGAGGAGCCTGGTGGCCCTGCTCCACCCACGGGCCGTGCTGTCACCAGCCACAAGGTGGCGCCAGGAGTCTCTCCCAGCTCTAGCCATTCCTGCTGGGCCGGGGATTCCCACAGGGCTGTGCTCCAGAACTGGCTCCCAGAGCCGAGGATGATTTGAATGGGCGGCTGCACATCTCCAGGTCTGTGGGGTGGGAGGTCAGTTGGGTGGGAACAGTTCAACTGTACTCCTACTTCCAGCTTCTTCCTTGAAAGCTGCAGGCAGGGCTCGCCCGTCTGTCGGTCAGACGTGGAGATGGCATTTGTGGGGAAGGCCTCCCTCCAGCCCCTCCTCTGGAGACTGTGGACTCGTGGTGGGGTGGGGTGTCGAGGAGACCAAATCCCACGAGCCCGGGGAGCAAGCTCTGCGTCCTTTCTTTTTCGTGACAG
Seq C2 exon
CTCAAACCTGGCAAAGAAGATAAGCTTTTCAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089094-KDM2B:NM_032590:17
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)