RnoEX0047497 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50172222-50175458:+
Coord C1 exon
chr16:50172222-50172317
Coord A exon
chr16:50173825-50173959
Coord C2 exon
chr16:50174709-50175458
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTGATTGCTTCATAGGTG
3' ss Score
8.81
5' ss Seq
CTTGTAAGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
AATTCCAAAAACCAATATGCCTGCCTTCCAAAGCTGACACAAATACAATTTATACCAACTGCTGGGTGACTGGATGGGGCTACACAAAGGAACGAG
Seq A exon
GTGAGACCCAAAATATTCTACAAAAGGCAACTATTCCCTTGGTACCAAATGAAGAATGCCAGAAAAAATATAGAGATTATGTTATAACCAAGCAGATGATCTGTGCTGGCTACAAAGAAGGTGGAATAGATGCTT
Seq C2 exon
GGAGATTCCGGTGGCCCCTTAGTTTGCAAACATAGTGGAAGGTGGCAGTTGGTGGGTATCACCAGCTGGGGCGAAGGCTGTGCCCGCAAGGAGCAACCAGGAGTCTACACCAAAGTTGCTGAGTACATTGACTGGATATTGGAGAAGATACAGAGCAGCAAGGAAAGAGCTCTGGAGACATCTCCAGCATGAGGAGGCTGGGTACTGATGGGGAAGAGCCCAGCTGGCACCAGCTTTACCACCTGCCCTCAAGTCCTACTAGAGCTCCAGAGTTCTCTTCTGCAAAATGTCGATAGTGGTGTCTACCTCGCATCCTTACCATAGGATTAAAAGTCCAAATGTAGACACAGTTGCTAAAGACAGCGCCATGCTCAAGCGTGCTTCCTGCCTTGAGCAACAGGAACGCCAATGAGAACTATCCAAAGATTACCAAGCCTGTTTGGAAATAAAATGGTCAAAGGATTTTTATTAGGTAGTGAAATTAGGTAGTTGTCCTTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'15-20,'15-19,16-20
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.9=100)
A:
PF0008921=Trypsin=FE(19.9=100)
C2:
PF0008921=Trypsin=PD(19.5=70.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCTGCCTTCCAAAGCTG
R:
GCTCTTTCCTTGCTGCTCTGT
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]