GgaEX6035320 @ galGal3
Exon Skipping
Gene
ENSGALG00000013571 | F1NUN5_CHICK
Description
NA
Coordinates
chr4:63227088-63231228:+
Coord C1 exon
chr4:63227088-63227183
Coord A exon
chr4:63229434-63229573
Coord C2 exon
chr4:63231079-63231228
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCGTAACACCTATTACATAGGTC
3' ss Score
4
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATCTTCAACTTCCTATTTGCCTGCCATCAAAAGAAGAGGCTAGCATTCTCTATACTGACTGCTGGGTAATTGGATGGGGTTACAGGAAGGAAAGAG
Seq A exon
GTCGTGTAGAAGATATTCTTCAGAAAGTTACTGTTCCCCTAATGTCAAAAGAGGAATGCCAGGCAAGATACCGGAAGCGCAGAATAGATGACAAAGAGATCTGTGCTGGCTATGATGAAGGTGGAAAGGATGCCTGTAAG
Seq C2 exon
GGAGATTCTGGAGGACCACTGTCATGCAGGCACGAGGAAGTGTGGTATCTGGTGGGCATCACTAGTTGGGGTGAAGGCTGTGCTCGGCCCCAGCAGCCAGGAGTCTACACAAAAGTTGTTGAATTTTCAGACTGGATTTTGGAAAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.9=100)
A:
PF0008921=Trypsin=FE(19.9=100)
C2:
PF0008921=Trypsin=PD(19.5=86.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCAACTTCCTATTTGCCTGC
R:
TTTTCCAAAATCCAGTCTGAAAATTC
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]