RnoEX6055607 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50199466-50201373:+
Coord C1 exon
chr16:50199466-50199561
Coord A exon
chr16:50200061-50200200
Coord C2 exon
chr16:50201212-50201373
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTAATATGACCTTTTTCAGATG
3' ss Score
6.67
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTTCAGCGGCCAATATGCCTGCCTTCCAAAGGAGACAGAAACGTAGTTCACACAGAATGCTGGGTGACTGGATGGGGATACACAAAATCAAGAG
Seq A exon
ATGAAGTACAAAGTACTCTCCAGAAAGCCAAGGTACCATTGGTGTCGAATGAAGAATGTCAAACAAGATACAGAAAACATAAAATAACCAACAAGGTGATCTGTGCAGGATATAAGGAAGGAGGGAAGGATACGTGTAAG
Seq C2 exon
GGAGATTCTGGAGGGCCCCTGTCCTGCAAACACAATGGGGTCTGGCACTTGGTGGGCATCACAAGCTGGGGTGAAGGCTGCGGCCAGAAAGAGAGGCCGGGTGTCTACACCAACGTGGCCAAGTATGTGGACTGGATTTTGGAGAAAACTCAGTCGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=FE(47.9=100)
C2:
PF0008921=Trypsin=PD(46.9=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATATGCCTGCCTTCCAA
R:
TCATTCCGACTGAGTTTTCTCCA
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]