MmuEX6035496 @ mm9
Exon Skipping
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:46326524-46328315:-
Coord C1 exon
chr8:46328220-46328315
Coord A exon
chr8:46327571-46327710
Coord C2 exon
chr8:46326524-46326963
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACTAATATGACCCTTTTCAGGTG
3' ss Score
7.43
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATTTTCAGCGGCCAATATGCCTGCCTTCCAAAGGAGATAGAAACGCAGTGCACACAGAATGCTGGGTGACTGGATGGGGGTACACAGCACTAAGAG
Seq A exon
GTGAAGTACAAAGTACTCTTCAGAAAGCCAAGGTTCCATTGGTGTCAAATGAAGAATGTCAGACAAGATACAGAAGACACAAAATAACCAATAAGATGATCTGTGCAGGCTACAAAGAAGGAGGGAAGGATACGTGCAAG
Seq C2 exon
GGAGATTCTGGAGGGCCCCTGTCCTGCAAATACAATGGGGTCTGGCACTTGGTGGGCATCACAAGCTGGGGTGAAGGCTGTGGTCAGAAGGAGAGACCGGGGGTCTACACGAACGTGGCCAAGTACGTGGACTGGATTCTGGAGAAAACTCAAACAGTCTGAAAGAGTTCAACTGGTATCACTTTGTGGCCCTGGAAGATTATTCCATAGAAATGAGCTTGACGTCTCTGATGAAGACACTGGGATACTGACTCTTCCACTGTAACCAATTGAATGGCCTTGATGTACGTAAGAACACCCAGAAAGAAAACTATTATTTTCAGAATTCCTGATCTGGGAGAACCACTGGTTGTTTTCTGCATCCAGCTACTACTCAAGGAAACAAATACAGCAAGGAGATTTTAAAAATAAAAACACATCAGATATATAAGGAAAATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=FE(20.2=100)
C2:
PF0008921=Trypsin=PD(19.7=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACGCAGTGCACACAGAA
R:
CCAGGGCCACAAAGTGATACC
Band lengths:
253-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: