MmuEX6035496 @ mm10
Exon Skipping
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:45241174-45242961:-
Coord C1 exon
chr8:45242866-45242961
Coord A exon
chr8:45242217-45242356
Coord C2 exon
chr8:45241174-45241609
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACTAATATGACCCTTTTCAGGTG
3' ss Score
7.43
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATTTTCAGCGGCCAATATGCCTGCCTTCCAAAGGAGATAGAAACGCAGTGCACACAGAATGCTGGGTGACTGGATGGGGGTACACAGCACTAAGAG
Seq A exon
GTGAAGTACAAAGTACTCTTCAGAAAGCCAAGGTTCCATTGGTGTCAAATGAAGAATGTCAGACAAGATACAGAAGACACAAAATAACCAATAAGATGATCTGTGCAGGCTACAAAGAAGGAGGGAAGGATACGTGCAAG
Seq C2 exon
GGAGATTCTGGAGGGCCCCTGTCCTGCAAATACAATGGGGTCTGGCACTTGGTGGGCATCACAAGCTGGGGTGAAGGCTGTGGTCAGAAGGAGAGACCGGGGGTCTACACGAACGTGGCCAAGTACGTGGACTGGATTCTGGAGAAAACTCAAACAGTCTGAAAGAGTTCAACTGGTATCACTTTGTGGCCCTGGAAGATTATTCCATAGAAATGAGCTTGACGTCTCTGATGAAGACACTGGGATACTGACTCTTCCACTGTAACCAATTGAATGGCCTTGATGTACGTAAGAACACCCAGAAAGAAAACTATTATTTTCAGAATTCCTGATCTGGGAGAACCACTGGTTGTTTTCTGCATCCAGCTACTACTCAAGGAAACAAATACAGCAAGGAGATTTTAAAAATAAAAACACATCAGATATATAAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=FE(20.2=100)
C2:
PF0008921=Trypsin=PD(19.7=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACGCAGTGCACACAGAA
R:
CCAGGGCCACAAAGTGATACC
Band lengths:
253-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types