BtaEX6106619 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15367918-15370080:+
Coord C1 exon
chr27:15367918-15368013
Coord A exon
chr27:15368566-15368705
Coord C2 exon
chr27:15369271-15370080
Length
140 bp
Sequences
Splice sites
3' ss Seq
AAACCAAAATTTTGTTTTAGACA
3' ss Score
5.47
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ACTCTCAATGGCCCATATGCCTACCTTCCAAAGGAGATAGAAATGTGATGTATACTGAATGCTGGGTGACCGGATGGGGATACAGAAAATTAAGAG
Seq A exon
ACAAAATACAGAATACTCTCCAGAAAGCCAAGGTACCCTTGATGACAAATGAAGAATGCCAGGCAGGTTACAGAGAGCACAGAATAACCAGCAAGATGGTCTGTGCAGGCTACAGAGAAGGAGGGAAGGACGCCTGTAAG
Seq C2 exon
GGGGATTCAGGGGGGCCCCTGTCCTGTAAGCACAACGAGGTGTGGCACCTGGTAGGCATCACGAGCTGGGGTGAAGGCTGCGGCCAAAGGGAGCGGCCAGGTGTTTACAGCAATGTGGTCGAGTACTTGGACTGGATTCTGGAGAAAACGCAAGGCCCTTGAAAGGGTCCTCAGAGACCGCTCGACTTCCTGAAGGGTAAATCAGATCACTCCCTGAAAAGGGCTTGGATTTCACTGAAGAAGACACTGCACCTTCATTTTCCTCCACAGGCTACAATTCTGAGCCTGTAACAGACTGGAGGGGTTGGGTATTAGTAAGAAAAAGCAAACTGTCATGCTCCCCAAGCTCCCAGGGTTCCATGATGATCCGAGTCTGACTTGAGTATCCAGGCTCTGTTTTGTTGGCTATACCTCTCCTAAACCAAGGATATACAATCAAGATTAAGATATTTAAAGATGAAAGCACAGCCAGATAAACCAGAAAAGAATCAAGTGGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572-'15-16,'15-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.9=100)
A:
PF0008921=Trypsin=FE(19.9=100)
C2:
PF0008921=Trypsin=PD(19.5=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATATGCCTACCTTCCAA
R:
TTCAAGGGCCTTGCGTTTTCT
Band lengths:
249-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]