BtaEX6106608 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15343851-15346759:+
Coord C1 exon
chr27:15343851-15343946
Coord A exon
chr27:15345697-15345836
Coord C2 exon
chr27:15346334-15346759
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTTCTGATGTTGCCTCACAGGTA
3' ss Score
10.12
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATTTGCAAAAAGCAATATGCCTACCTTCCAAAGATGATACAAAACCAGTTTACACTGACTGTTGGATAACTGGATGGGGCTTCACAGAGGAAAAAG
Seq A exon
GTAAAATCCAAAATACCCTACAAAAGGCAAATATTCCTTTGATATCAAATGAAGAATGCCAAAAAAGTTACAGAGATTATAAAATAACCAAACAGATGATCTGTGCTGGCTATAAAGAAGGAGGAAAAGATGCCTGCAAG
Seq C2 exon
GGTGATTCAGGCGGTCCCTTGGTTTGTCAACATGAAGAAACATGGCATTTGGTGGGCATCACTAGTTGGGGTGAAGGCTGTGCCCGCAGGGAACAACCAGGAGTCTACACCAAAGTTGCTGAGTACGTGGACTGGATTTTAGAGAAAACCCAGGACAGCCATGGTCAGCCTTTGAGGAAGTAGCCAGCTTGAGAAGCTTCATAGACACAGGGAAGAGCCCCCCTTGGAGTATTCGATTAACACCCTGTGTCCAATTCACGTGCTGAACCTTGGGGTTTCTCATCTGCAAAAACCCCAGAGGACAAGAGGATTGGTGTCTACCTCTCGTCCCTGTCATAAAAGGAACAATGCATAACGCTTTCAGCATTCAGTAATAACACCGTAATGGGAGAGAAAAACAACTGAGTATCTCTACAATTGTTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.9=100)
A:
PF0008921=Trypsin=FE(19.9=100)
C2:
PF0008921=Trypsin=PD(19.5=73.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGATGGGGCTTCACAGA
R:
GCTCTTCCCTGTGTCTATGAAGC
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]