RnoEX0049569 @ rn6
Exon Skipping
Gene
ENSRNOG00000028730 | Lcn12
Description
lipocalin 12 [Source:RGD Symbol;Acc:1589474]
Coordinates
chr3:2717627-2718123:-
Coord C1 exon
chr3:2718047-2718123
Coord A exon
chr3:2717861-2717983
Coord C2 exon
chr3:2717627-2717728
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGACATGTGTGTCCCCCAGGGT
3' ss Score
9.88
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGGCAAGCATTGCAGCACTTGGTCCTATACCCTGATCCCAACAAACAAGCCTGGGCAATTCACCAGGGACAACAGAG
Seq A exon
GGTCAGGGCCTGGGGCAGACAAAGAAAACATACAGGTCATAGAGACAGACTACGTCAAGTTCGCCCTGGTGCTGTCCCTCAGACAGGCAAGCAACCAGAACATCACCAGGGTCAGCCTTCTGG
Seq C2 exon
GTAGAGACTGGAAGATAACTCATAAGACAATAGACAGGTTCATCTGCCTGACCAAGACCCAAAACCTCACAAAGAACAACCTTCTCTTCCCTGATTTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028730-'5-7,'5-4,8-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.8=100)
A:
PF0006118=Lipocalin=FE(28.1=100)
C2:
PF0006118=Lipocalin=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCATTGCAGCACTTGGTC
R:
AATCAGGGAAGAGAAGGTTGTTC
Band lengths:
170-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]