RnoEX6015862 @ rn6
Exon Skipping
Gene
ENSRNOG00000028730 | Lcn12
Description
lipocalin 12 [Source:RGD Symbol;Acc:1589474]
Coordinates
chr3:2716534-2718123:-
Coord C1 exon
chr3:2718047-2718123
Coord A exon
chr3:2717627-2717728
Coord C2 exon
chr3:2716534-2716638
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTCCTCTGGCCACAGGTA
3' ss Score
9.83
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GGGCAAGCATTGCAGCACTTGGTCCTATACCCTGATCCCAACAAACAAGCCTGGGCAATTCACCAGGGACAACAGAG
Seq A exon
GTAGAGACTGGAAGATAACTCATAAGACAATAGACAGGTTCATCTGCCTGACCAAGACCCAAAACCTCACAAAGAACAACCTTCTCTTCCCTGATTTAACTG
Seq C2 exon
ACTGGTTACTGGATCCAAAAGTCTGCTGAAGAAGGAAACAGTTCCTGCCAGTAAAGCCTCAGCCTGCCATTGCTCTCAACATAAATAAACACCCAGTGTGACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028730-'5-9,'5-7,9-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.8=100)
A:
PF0006118=Lipocalin=FE(23.3=100)
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCATTGCAGCACTTGGTC
R:
AGAGTCACACTGGGTGTTTATT
Band lengths:
179-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]