MmuEX6099553 @ mm10
Exon Skipping
Gene
ENSMUSG00000026943 | Lcn12
Description
lipocalin 12 [Source:MGI Symbol;Acc:MGI:1924951]
Coordinates
chr2:25490845-25492363:-
Coord C1 exon
chr2:25492241-25492363
Coord A exon
chr2:25492008-25492109
Coord C2 exon
chr2:25490845-25490952
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTCCTCTGGCCACAGGTA
3' ss Score
9.65
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
GGTCAGGGCCTGGGGCAGACAGAGAGAATATACAGGTCATAGAGACAGACTACATCACGTTTGCCCTGGTGCTGTCCCTCAGACAGACAAGCAGCCAGAACATCACAAGGGTCAGCCTTCTGG
Seq A exon
GTAGAAACTGGAGACTTTCTCATAAGACAATAGACAAGTTCATCTGCCTGACCAGGACCCAAAACCTCACAAAGGATAACTTCCTCTTTCCTGATTTGAGTG
Seq C2 exon
ACTGGTTACCGGATCCACAAGTCTGCTGAAGAAGGAACAGGTTCCTGCCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026943-'7-12,'7-10,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(28.1=100)
A:
PF0006118=Lipocalin=FE(23.3=100)
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGGCAGACAGAGAGAAT
R:
TGGAGTCATAGGCAGTGTGTT
Band lengths:
223-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types