HsaEX6064132 @ hg19
Exon Skipping
Gene
ENSG00000184925 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:28733]
Coordinates
chr9:139848300-139849278:+
Coord C1 exon
chr9:139848300-139848416
Coord A exon
chr9:139848606-139848707
Coord C2 exon
chr9:139849176-139849278
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTCCCTGGGCTGCAGGCA
3' ss Score
4.64
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
AGCCCGGGGCGGACAGAGAGGAGACCCGGGTGGTGGACAGCGACTACACCCAGTTCGCCCTGATGCTGTCCCGCAGACACACGAGCAGGCTGGCCGTCCTCAGGATCAGCCTGCTGG
Seq A exon
GCAGGAGCTGGTTGCTGCCTCCCGGGACGCTGGACCAGTTCATCTGCCTGGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCCCAGATGTGACTG
Seq C2 exon
GAGGTGCCCTGGACCTCAGCAGCCTGCCCTGGGTGGCAGCCCCAGCCTGACCACTCAGACAGCCGCGGCCCCCAAGGCCTGACTCTTCTTGTGGGAGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184925-'8-24,'8-23,9-24=AN
Average complexity
A_C2
Mappability confidence:
83%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.9=100)
A:
PF0006118=Lipocalin=FE(23.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGACAGAGAGGAGACC
R:
GCCCTCCCACAAGAAGAGTCA
Band lengths:
210-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)