BtaEX6047644 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039531 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:HGNC:28733]
Coordinates
chr11:106276096-106277711:-
Coord C1 exon
chr11:106277592-106277711
Coord A exon
chr11:106277392-106277493
Coord C2 exon
chr11:106276096-106276124
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCATGCTCCTCGGCCCCCAGGCA
3' ss Score
7.94
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CAGAGCCCGGGGCGGACCCCGAGGAGATCCAAGTGTATGACACGGACTACGCGTCCTTCGCCCTCCTACTCTCCAAAAAGCAGTCGGACCTGCAGAGGATCCTCAGGGTCAGCCTGCTGT
Seq A exon
GCAGAATATGGGCTATTCAGACCCAGGTGCTGGACAAGTTCGTCTGCCTGGTCCGAGCTCAGGGCCTCTCGGATGACAGCATCGTCTTTCCAGACCTGACAG
Seq C2 exon
AGTGGTCAGTCCTGCCTGAGAAATGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039531-'8-11,'8-8,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.123 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(27.4=100)
A:
PF0006118=Lipocalin=FE(23.3=100)
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGAGGAGATCCAAGTGTA
R:
AGCATTTCTCAGGCAGGACTG
Band lengths:
131-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]