MmuEX6099553 @ mm9
Exon Skipping
Gene
ENSMUSG00000026943 | Lcn12
Description
lipocalin 12 [Source:MGI Symbol;Acc:MGI:1924951]
Coordinates
chr2:25346365-25347883:-
Coord C1 exon
chr2:25347761-25347883
Coord A exon
chr2:25347528-25347629
Coord C2 exon
chr2:25346365-25346472
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTCCTCTGGCCACAGGTA
3' ss Score
9.65
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
GGTCAGGGCCTGGGGCAGACAGAGAGAATATACAGGTCATAGAGACAGACTACATCACGTTTGCCCTGGTGCTGTCCCTCAGACAGACAAGCAGCCAGAACATCACAAGGGTCAGCCTTCTGG
Seq A exon
GTAGAAACTGGAGACTTTCTCATAAGACAATAGACAAGTTCATCTGCCTGACCAGGACCCAAAACCTCACAAAGGATAACTTCCTCTTTCCTGATTTGAGTG
Seq C2 exon
ACTGGTTACCGGATCCACAAGTCTGCTGAAGAAGGAACAGGTTCCTGCCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026943-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(28.1=100)
A:
PF0006118=Lipocalin=FE(23.3=100)
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGGCAGACAGAGAGAAT
R:
TGGAGTCATAGGCAGTGTGTT
Band lengths:
223-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: