RnoEX0057062 @ rn6
Exon Skipping
Gene
ENSRNOG00000049236 | Myh9
Description
myosin, heavy chain 9 [Source:RGD Symbol;Acc:3140]
Coordinates
chr7:119024552-119025942:-
Coord C1 exon
chr7:119025849-119025942
Coord A exon
chr7:119025399-119025410
Coord C2 exon
chr7:119024552-119024640
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGTGGAACTCAGCAGTGC
3' ss Score
-2.58
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GGGTGAGTCTGGAGCAGGCAAGACAGAGAACACCAAGAAAGTCATCCAGTACCTGGCACATGTGGCCTCCTCACACAAGAGCAAGAAGGACCAG
Seq A exon
TGCCCTGGCTAG
Seq C2 exon
GAGACCTGTTTTAAAAACAGAGCTGTGAGGTTAGGAGGTCTCTTGCTGTGGTTTTCTGTCTCTGAATTTGGAGTAAAATCTATTTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049236-MICROEX1-2/3
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.2=100)
A:
PF0006316=Myosin_head=PD(0.1=0.0)
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000037611fB9202
Main Skipping Isoform:
ENSRNOT00000037611fB9203
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTACCTGGCACATGTGG
R:
AACCACAGCAAGAGACCTCCT
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]