MmuEX0030387 @ mm9
Exon Skipping
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77622684-77626484:-
Coord C1 exon
chr15:77626391-77626484
Coord A exon
chr15:77625926-77625937
Coord C2 exon
chr15:77622684-77622776
Length
12 bp
Sequences
Splice sites
3' ss Seq
GGATTGTGGTGGAACTCCAGTGC
3' ss Score
-0.86
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GGGGGAGTCTGGAGCAGGGAAGACAGAGAACACCAAGAAAGTCATCCAGTACCTGGCACATGTGGCCTCCTCACACAAGAGCAAGAAGGACCAG
Seq A exon
TGCCCTGGCTAG
Seq C2 exon
GGGGAGTTGGAGCGGCAGCTGCTACAGGCCAACCCTATCCTAGAGGCCTTTGGAAACGCCAAGACGGTGAAGAATGACAACTCCTCTCGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=1.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.2=100)
A:
PF0006316=Myosin_head=PD(0.1=0.0)
C2:
PF0006316=Myosin_head=FE(4.4=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTCACACAAGAGCAAG
R:
TCATTCTTCACCGTCTTGGCG
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: