MmuEX0030387 @ mm10
Exon Skipping
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77794652-77796054:-
Coord C1 exon
chr15:77795961-77796054
Coord A exon
chr15:77795496-77795507
Coord C2 exon
chr15:77794652-77794740
Length
12 bp
Sequences
Splice sites
3' ss Seq
GGATTGTGGTGGAACTCCAGTGC
3' ss Score
-0.86
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GGGGGAGTCTGGAGCAGGGAAGACAGAGAACACCAAGAAAGTCATCCAGTACCTGGCACATGTGGCCTCCTCACACAAGAGCAAGAAGGACCAG
Seq A exon
TGCCCTGGCTAG
Seq C2 exon
GAGACCTGTTTTAAAAACAGCACTGTGAGGTTAGAAGGTCTCTGGCTGTGGTTTTCTGTCTCTGAATTTGGAGTAAAATCTATTTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443-'12-15,'12-14,13-15
Average complexity
C3
Mappability confidence:
100%=75=75%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.2=100)
A:
PF0006316=Myosin_head=PD(0.1=0.0)
C2:
NA
Main Inclusion Isoform:
ENSMUST00000016771fB2600
Main Skipping Isoform:
ENSMUST00000016771fB2599
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGGCCTCCTCACACAAG
R:
GAAAACCACAGCCAGAGACCT
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types