HsaEX0040976 @ hg38
Exon Skipping
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36322429-36326661:-
Coord C1 exon
chr22:36326568-36326661
Coord A exon
chr22:36326024-36326035
Coord C2 exon
chr22:36322429-36322521
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATTATGGTTGAACCCAGCAGTGT
3' ss Score
-1.83
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGGTGAATCTGGAGCTGGCAAGACGGAGAACACCAAGAAGGTCATCCAGTATCTGGCGTACGTGGCGTCCTCGCACAAGAGCAAGAAGGACCAG
Seq A exon
TGTCCTCGCTAG
Seq C2 exon
GGCGAGCTGGAGCGGCAGCTGCTGCAGGCCAACCCCATCCTGGAGGCCTTCGGGAACGCCAAGACCGTGAAGAATGACAACTCCTCCCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=1.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.2=100)
A:
PF0006316=Myosin_head=PD(0.1=0.0)
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
ENST00000216181fB4482
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCACAAGAGCAAGAAGGAC
R:
TCATTCTTCACGGTCTTGGCG
Band lengths:
101-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development