HsaEX0040976 @ hg19
Exon Skipping
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36718474-36722706:-
Coord C1 exon
chr22:36722613-36722706
Coord A exon
chr22:36722069-36722080
Coord C2 exon
chr22:36718474-36718566
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATTATGGTTGAACCCAGCAGTGT
3' ss Score
-1.83
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGGTGAATCTGGAGCTGGCAAGACGGAGAACACCAAGAAGGTCATCCAGTATCTGGCGTACGTGGCGTCCTCGCACAAGAGCAAGAAGGACCAG
Seq A exon
TGTCCTCGCTAG
Seq C2 exon
GGCGAGCTGGAGCGGCAGCTGCTGCAGGCCAACCCCATCCTGGAGGCCTTCGGGAACGCCAAGACCGTGAAGAATGACAACTCCTCCCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=1.000 C2=0.073
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(23.5=100)
A:
PF0006316=Myosin_head=PD(0.1=0.0)
C2:
PF0006316=Myosin_head=FE(4.4=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCACAAGAGCAAGAAGGAC
R:
TCATTCTTCACGGTCTTGGCG
Band lengths:
101-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)