GgaEX1037901 @ galGal4
Exon Skipping
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51629133-51633677:+
Coord C1 exon
chr1:51629133-51629226
Coord A exon
chr1:51629861-51629874
Coord C2 exon
chr1:51633585-51633677
Length
14 bp
Sequences
Splice sites
3' ss Seq
ACTATTGCCGAATTCACCAGTTG
3' ss Score
3.16
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGGCGAATCAGGAGCTGGTAAGACGGAGAACACCAAGAAGGTCATTCAGTATCTGGCTCACGTTGCTTCCTCACACAAGTCTAAAAAAGACCAG
Seq A exon
TTGTATCCTCGTAG
Seq C2 exon
GGGGAACTAGAGAGGCAGTTACTCCAGGCTAATCCCATCCTGGAGGCCTTTGGAAATGCCAAGACTGTAAAGAATGACAACTCCTCAAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=1.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(24.8=100)
A:
PF0006316=Myosin_head=PD(1.6=40.0)
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
ENSGALT00000020472fB9678
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGGCTCACGTTGCTTCC
R:
AAAGGCCTCCAGGATGGGATT
Band lengths:
96-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]