RnoEX0057359 @ rn6
Exon Skipping
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89153170-89157332:+
Coord C1 exon
chr17:89153170-89153276
Coord A exon
chr17:89156039-89156079
Coord C2 exon
chr17:89157189-89157332
Length
41 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTCTACTCCCTTTAGAAG
3' ss Score
7.05
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGTCTCTAAAGGAGAAGAGTCAAAAATATTGAGACCTCCAAGACGACCTCGGAAACCTAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
Seq A exon
AAGTCAACCCAAGAAGAAAAACGAAGACCAAGAAAAGACAG
Seq C2 exon
TCAAGGAAAGTTATTAGGTTTGGAAGATTTCTATTATAAGGAACTTTTTCCCACTCATTTCGGACCCAAGGCACATAGCTCTAATGCAAGAGAATGGAAAGCACAGGAGGAACCCCAGGATCAGCGCATTGAGAGTAATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478-'34-38,'34-37,35-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=1.000 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACCTCCAAGACGACCTC
R:
CTTGGGTCCGAAATGAGTGGG
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]