GgaEX6018658 @ galGal3
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
NA
Coordinates
chr2:16213811-16218068:-
Coord C1 exon
chr2:16217959-16218068
Coord A exon
chr2:16215670-16215710
Coord C2 exon
chr2:16213811-16213951
Length
41 bp
Sequences
Splice sites
3' ss Seq
GACTCTGTGGTTTATTTTAGAAA
3' ss Score
8.67
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TTGCAGCCAAAGTAGAAGACACTCGCCCACTGCAAAGACCCCCAAGGAGGCCACGGAAGCCCAAGACATTAAATAACCCTGAAGATTCCACCTACTACACTCTAATACAT
Seq A exon
AAATCAATACAAGATGAAAAACGGAAACCAAGAAAAGAAAG
Seq C2 exon
TCTGGGCAAGGTGCTAGATTTAGATATCTACTACCATGAAATTTCATCTACTGGTTCCACCTCAAAGGACAGCAGCTCTACCACAAAAAGGAAGAGACATCCAGTCGAGCGCAGAACTTCAGCTTTAAGAGCTACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.708
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGAAGCCCAAGACATTA
R:
TGTGGTAGAGCTGCTGTCCTT
Band lengths:
145-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]