DreEX0048683 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6134217-6141853:-
Coord C1 exon
chr24:6141762-6141853
Coord A exon
chr24:6141627-6141667
Coord C2 exon
chr24:6134217-6134399
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCACACTGGGTCTTTTACAGAGG
3' ss Score
5.83
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTGACACAAAGCAGTCTCGAACACCACGCCGCGCACAACAACCCAAGACCCTGAACACGCCGGAGGACTCCACATACTACACACTTATTCAT
Seq A exon
AGGTCTGTCCAGGACGATAAAAGGAGGCCGCGGAAACAAAG
Seq C2 exon
CCCAAAAAAGTTGGACAACGATGACCAATACTACCAGGGTTTGTCCAGCAGTAAATCCACCAGCCTTCCCAATGAACGACGCCGGTCGAGCAAGCGGAGGGCTTCTGATGAAAGACGCTCCTCTGAAAGACCACTCTCTGATGTCCCCAAATCTGAAATCCCCAAAGACCCATTGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186-'41-37,'41-36,42-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGTCTCGAACACCACG
R:
TGCTGGACAAACCCTGGTAGT
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]