MmuEX6099205 @ mm10
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22600082-22602262:+
Coord C1 exon
chr2:22600082-22600188
Coord A exon
chr2:22601110-22601150
Coord C2 exon
chr2:22602119-22602262
Length
41 bp
Sequences
Splice sites
3' ss Seq
AATTCTTCTACTCCCTTTAGAAG
3' ss Score
6.59
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGTCTCTAAAGGGGAAGAACCAAAAATACTGAGACCTCCAAGACGACCTCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
Seq A exon
AAGTCAACCCAAGAAGAAAAACGGAGACCAGGAAAAGACAG
Seq C2 exon
TCAAGGGAAGTTATTAGGTTTGGAAGATTTCTATTATAAGGAATTTTTGCCTACTCATTACGGACCCAAGGCACATAGCTCTAATGCAAGAGAATGGAAAGCACTGAAGGAACCCCAGGCTCAACCCATTGAGAGTAATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-'47-49,'47-46,51-49=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types