BtaEX6064138 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26918966-26926612:+
Coord C1 exon
chr13:26918966-26919072
Coord A exon
chr13:26924889-26924929
Coord C2 exon
chr13:26926469-26926612
Length
41 bp
Sequences
Splice sites
3' ss Seq
AATTATTCTATTCCCTTTAGAAA
3' ss Score
7.52
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
GTATCTCAAAAGGAGAGGAGCCAAAAATATTGAGACCCCCAAGGCGGCCCCGAAAACCCAAAACACTAAATAACTCTGAAGACTCCACATACTATTCTCTGCTTCAT
Seq A exon
AAATCAATCCAAGAAGAAAAACGAAGACCAAGGAAAGATAG
Seq C2 exon
TCAGGGGAAATTATTAGATCTGGAGGATTTCTATTATAAGGAGTTTTTGCCCAGTCATCCTGGACCAAAGGACCACAACCCTAGTTTAAGAGAACGAAGACAACAGCAAGAACTCCAGAACCAATGTTTCAAAGCTGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123-'30-37,'30-36,31-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCGAAAACCCAAAACACT
R:
TGTGGTCCTTTGGTCCAGGAT
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]