RnoEX0064374 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2335283-2337149:-
Coord C1 exon
chr14:2337006-2337149
Coord A exon
chr14:2336297-2336362
Coord C2 exon
chr14:2335283-2335429
Length
66 bp
Sequences
Splice sites
3' ss Seq
CACCTTTTGCTCTCTGTTAGCCA
3' ss Score
5.2
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TCTCTGACACAGTTCCTGGGATGGTCAGTGTTGAACACAGACACCTATGACAAGATGAACAAGCTGGAGAACCGTAAGGACATCGCCCAGGACATGGTTCTGTACCATGTGAGATGCGACAAGGATGAAATCCAGGAAATCTTG
Seq A exon
CCAACAAGGGATCGCCTGGGGAAGGAACCTGCTGACTGTGAGGAGGATGAGCTGGGGAAAATCTTG
Seq C2 exon
AAGGAGGAACTTCCAGGGCCTACCAAGTTTGACATCTATGAGTTCCACTTCTCTGATCTGGAGTGCACCGAGCTGGAGCTAGTCAAATGTGGCATCCAGATGTACTACGAGCTGGGTGTAGTCCGAAAGTTCCAGATTCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'11-15,'11-13,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTTCCTGGGATGGTCA
R:
TCAAACTTGGTAGGCCCTGGA
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]