BtaEX6032568 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108841561-108842674:+
Coord C1 exon
chr6:108841561-108841704
Coord A exon
chr6:108842023-108842088
Coord C2 exon
chr6:108842528-108842674
Length
66 bp
Sequences
Splice sites
3' ss Seq
TAGCACGTCTTCTCTCCCAGCCA
3' ss Score
4.95
5' ss Seq
CTGGTCAGA
5' ss Score
3.96
Exon sequences
Seq C1 exon
TCTCTCACACAGTTCCTGGGCTGGTCGGTGCTGAACACTGACACCTACGACAAGATGAACAAGCTGGAGAACCGCAAGGACATCGCCCAAGACATGGTCCTGTACCACGTGAGATGTGACAGAGAGGAAATCCAGCTGATCCTG
Seq A exon
CCAACCAGAGAACGCCTCGGGAAGGAGCCTGCCGACTGCGAGGAGGACGAGCTGGGGAAAATCCTG
Seq C2 exon
AAGGAAGTGCTGCCCGGGCCCGCCAAGTTCGACATCTATGAGTTCCACTTCTCGGACCTGGAGTGCACGGAACTGGAGCTGGTCAAATGCGGTATCCAGATGTACTATGAGCTGGGTGTGGTTCGAAAGTTCCAGATCCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACATCGCCCAAGACATG
R:
TGGATACCGCATTTGACCAGC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]