HsaEX1027510 @ hg38
Exon Skipping
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr4:657351-660613:+
Coord C1 exon
chr4:657351-657494
Coord A exon
chr4:658952-659017
Coord C2 exon
chr4:660467-660613
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACATCTGTGTCTCTGTGTAGCCA
3' ss Score
9.06
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TCCCTGACACAGTTCCTGGGCTGGTCAGTGATGAACACCGACACCTACGACAAGATGAACAAGCTGGAGAACCGCAAGGACATCGCACAGGACATGGTCCTTTACCACGTGAAGTGCGACAGGGACGAGATCCAGCTCATCCTG
Seq A exon
CCAACCAGAGCGCGCCTGGGGAAGGAGCCTGCTGACTGCGATGAGGACGAGCTGGGCGAAATCCTG
Seq C2 exon
AAGGAGGAGCTGCCAGGGCCCACCACATTTGACATCTACGAATTCCACTTCTCTGACCTGGAGTGCACCGAACTGGACCTGGTCAAATGTGGCATCCAGATGTACTACGAGCTGGGCGTGGTCCGAAAGTTCCAGATCCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256-'29-27,'29-26,30-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGACACCTACGACAAGA
R:
TGCACTCCAGGTCAGAGAAGT
Band lengths:
177-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains