DreEX6057940 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24726738-24727416:-
Coord C1 exon
chr14:24727273-24727416
Coord A exon
chr14:24726973-24727038
Coord C2 exon
chr14:24726738-24726884
Length
66 bp
Sequences
Splice sites
3' ss Seq
GAAACTGTGTTTTTGTTCAGAAC
3' ss Score
6.55
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
TCTCTCACTCAGTTCCTGGGATGGTCAGTGCTGAATACAGACACATACGATAAGATGAACAAGCTAGAAAATCGTAAGGACATCTTTCAGGACATGGTCATGTACCACGTCAAATGCAGGAAGGATGAGATTCAGAATATCTTG
Seq A exon
AACACACGTGAGATGTATGATAAAGAGCCTGACGAATGTGAAGAGGACGAGCTGGAAGATATTCTG
Seq C2 exon
AATGAAGTGCTGCCAGACTCTGAAGAATCTGAGATCTTTGAGTTTCACTTCTGTGACTTTGAATTCAGTGAACTGGACCTCGTGAAGTGTGGCATCAAGATGTACTATGAGCTGGGAGTGGTAGACAAGTTCCATATTCCACGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTCAAATGCAGGAAGGA
R:
ACTTGTCTACCACTCCCAGCT
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]