RnoEX0065295 @ rn6
Exon Skipping
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64815628-64817690:-
Coord C1 exon
chr10:64817608-64817690
Coord A exon
chr10:64817022-64817160
Coord C2 exon
chr10:64815628-64816688
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATCCTTATCTCCCTCCTCAGAAT
3' ss Score
9.21
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGCTGACATGGATGTGTGCCTTACAAACTATGGTCACTGTAACTACGTGTCCGGGAAACATGCCTGCATATTCTACGATGAG
Seq A exon
AATACCAAACATTATGAGCTGTTAAACTACAGTGAGCACGGGACAACGGTGGACAATGTGCTGTATTCATGTGACTTCTCTGAGAAGACCCCGCCAACCCCCCCAAGCAGTATTGTTGCCAAAGTACAGAGTGTCATCA
Seq C2 exon
GGCGCCGCCGACACCAGAAACAGGATGAAGAGCCAAGTGAGGAGGCAGCCATGATGAGTTCCCAGGCCCAGGGGCCACAGCGGAGACCTTGCAATTGCAAAGCCAGCAGCTCAAGCTTGATCGGGGGCAGTGGGGCCGGCTGGGAGGGCACAGCCTTACTACACCATGGCAGCTACATCAAGCTGGGCTGCCTGCAGTTTGTCTTCAGCATCACTGAGTTTGCGACCAAACAGCCCAAAGGCGATGCCAACCTGCTGCAGGATGGGGTCTTGGCTGAGAAGCTCTCTCTCAAGCCCCATCAGGGCCCTGTGCTGCGCTCCAACTCCGTTCCCTAGGCCATTGGCCTGGACACCCATCCAAGACTCCTGCAATGCAAAAATGTATACGAACCAAGCCCGGGTGTTTTCTATACCAGAAACCCTTCAACTACAATCTTTGCATGAAATGAAGAAAACCTTTTGACTGTTTTTTAAGACTTTTTTTCTTTTCTCAAGTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566-'26-24,'26-23,27-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.170 C2=0.378
Domain overlap (PFAM):
C1:
PF0049821=FHA=FE(41.5=100)
A:
PF0049821=FHA=PD(47.7=66.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACATGGATGTGTGCCTT
R:
GCTGCCATGGTGTAGTAAGGC
Band lengths:
254-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]