BtaEX0026781 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015976 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:20835680-20838094:-
Coord C1 exon
chr19:20838012-20838094
Coord A exon
chr19:20837311-20837449
Coord C2 exon
chr19:20835680-20836945
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTCCTCCTCCTCAGAAT
3' ss Score
9.93
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGCTGACATGGACGTGTGCCTTACAAACTATGGTCACTGTAACTACGTGTCCGGGAAACACGCCTGCATATTCTACGATGAG
Seq A exon
AATACCAAACATTATGAGCTGTTAAACTACAGTGAGCACGGGACAACGGTGGACAATGTGCTGTATTCATGTGACTTCTCTGAGAAGACCCCGCCAACCCCCCCAAGCAGTATTGTTGCCAAAGTGCAGAGTGTCATCA
Seq C2 exon
GGCGCCGCCGGCACCAGAAACAGGATGAAGAGCCAAGTGAAGAGGCAGCCATGATGAGTTCCCAGGCCCAGGGGCCGCAGCGGAGACCCTGCAACTGCAAAGCCAGCAGCTCGAGCTTGATTGGGGGCAGTGGGGCCGGCTGGGAGGGCACGGCCTTGCTGCACCACGGCAGCTACATCAAGCTGGGGTGCCTGCAGTTTGTCTTCAGCATCACTGAGTTTGCGACCAAACAGCCCAAAGGCGAGGCCGGCCTGCTGCAGGATGGGGTCTTGGCCGAGAAGCTCTCTCTCAAGCCCCACCAGGGCCCCGTGCTGCGCTCCAACTCCGTTCCCTAGGACTGGCGGCTACCCCGTCACCCGCCCGTCCACCCCACCCAAGACTCCTGCAATGCAAAAATGTACACAAACCAAGCCCGGGTTTTTTTTCTATACTCCACCGGAAACCCTTCGACTACAATCTTTGCATGAAATGAAGAAACCTTTTGACTGTTTTTTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015976_MULTIEX1-8/8=7-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.170 C2=0.351
Domain overlap (PFAM):
C1:
PF0049821=FHA=FE(41.5=100)
A:
PF0049821=FHA=PD(47.7=66.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTAACTACGTGTCCGGGA
R:
TGAAGACAAACTGCAGGCACC
Band lengths:
254-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development