GgaEX1043342 @ galGal4
Exon Skipping
Gene
ENSGALG00000004029 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:5882263-5884464:-
Coord C1 exon
chr19:5884382-5884464
Coord A exon
chr19:5883739-5883877
Coord C2 exon
chr19:5882263-5883454
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTTCTCCTCGCTCAGAAC
3' ss Score
7.88
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAGCCGATATGGATGTGTGCCTTACAAGCTATGGTCACTGTAACTACGTGTCCGGCAAACACGCCTGCATATTCTACGATGAG
Seq A exon
AACACGAAACATTACGAGCTGTTGAACTACAGCGAGCACGGGACGACGGTGGACAACGTTCTCTACTCGTGTGACTTCTCAGAGAAGATGGCTCCCACTCCTCCCAGCAGTATTGTTGCCAAAGTGCAGAGTGTGATAA
Seq C2 exon
AGCGACACAAAAGCAGGAAGCAGGAAGAGGAGCCGCACGGAGAAGCCGCCGTGATGAATTCGCAGGCACAGGGGCAGCATCGGAAGCCCTGCAACTGCAAAGCCAGCAGCTCCAGCTTGATAGGGGGCAGCGGGGCTGGCTGGGAGGGGACGGCTCTGCTCCACCACGGCAGTTACATCAAGCTGGGCTGCCTGCAGTTCGTTTTCAGCATTACCGAATTTGCGACCAAACAGCCCAAGGGGGACACTGCCTTAGTACAGGACATGGACTTGGAGGAGAAGCTCTCTCTGAAACCCCACCAGGTGCCCGTGCTGCGCTCCAACTCCGTTCCCTAGGAATTTGGAGGAAGGGAGCTTAGGAGATAAGGAAACGCCCTCAGACTCTTTGCAATGCAAAACTGTACAAACCCGAGGTGGGAATTTTCTATGTCAGCCCAGAGACTGTCCACACGCCATTTGCATGAAATGAAGAACGTTTAACTTTTTTTAATTTTCCTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004029_MULTIEX1-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.414
Domain overlap (PFAM):
C1:
PF0049821=FHA=FE(41.5=100)
A:
PF0049821=FHA=PD(47.7=66.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGTGTGCCTTACAAGCT
R:
GATGTAACTGCCGTGGTGGAG
Band lengths:
253-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]