GgaEX1043342 @ galGal3
Exon Skipping
Gene
ENSGALG00000004029 | PHF12
Description
NA
Coordinates
chr19:5847013-5848374:-
Coord C1 exon
chr19:5848292-5848374
Coord A exon
chr19:5847649-5847787
Coord C2 exon
chr19:5847013-5847364
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTTCTCCTCGCTCAGAAC
3' ss Score
7.88
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAGCCGATATGGATGTGTGCCTTACAAGCTATGGTCACTGTAACTACGTGTCCGGCAAACACGCCTGCATATTCTACGATGAG
Seq A exon
AACACGAAACATTACGAGCTGTTGAACTACAGCGAGCACGGGACGACGGTGGACAACGTTCTCTACTCGTGTGACTTCTCAGAGAAGATGGCTCCCACTCCTCCCAGCAGTATTGTTGCCAAAGTGCAGAGTGTGATAA
Seq C2 exon
AGCGACACAAAAGCAGGAAGCAGGAAGAGGAGCCGCACGGAGAAGCCGCCGTGATGAATTCGCAGGCACAGGGGCAGCATCGGAAGCCCTGCAACTGCAAAGCCAGCAGCTCCAGCTTGATAGGGGGCAGCGGGGCTGGCTGGGAGGGGACGGCTCTGCTCCACCACGGCAGTTACATCAAGCTGGGCTGCCTGCAGTTCGTTTTCAGCATTACCGAATTTGCGACCAAACAGCCCAAGGGGGACACTGCCTTAGTACAGGACATGGACTTGGAGGAGAAGCTCTCTCTGAAACCCCACCAGGTGCCCGTGCTGCGCTCCAACTCCGTTCCCTAGGAATTTGGAGGAAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004029-'20-28,'20-25,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.414
Domain overlap (PFAM):
C1:
PF0049821=FHA=FE(41.5=100)
A:
PF0049821=FHA=PD(47.7=66.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGTGTGCCTTACAAGCT
R:
GATGTAACTGCCGTGGTGGAG
Band lengths:
253-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]