DreEX0055017 @ danRer10
Exon Skipping
Gene
ENSDARG00000075509 | phf12b
Description
PHD finger protein 12b [Source:ZFIN;Acc:ZDB-GENE-110628-2]
Coordinates
chr15:24625714-24627777:+
Coord C1 exon
chr15:24625714-24625796
Coord A exon
chr15:24625909-24626047
Coord C2 exon
chr15:24626131-24627777
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTAATCTCTCGTAGAAC
3' ss Score
7.25
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTGCTGAAATGGATGTGTGCCTTACAAACTACGGTCATTGCAATTATGTTTCTGGGAAACATGCCTGCATCTTTTATGATGAA
Seq A exon
AACACGAAGCATTATGAGCTTCTGAACTACAGTGAACATGGGACAACTGTAGACAATGTGCTTTACTCGTGTGACTTCTCCGACAAACCAAACATCACATCACCTAGTGCACTCGCATCGAAAGTACAAAACAGCATCA
Seq C2 exon
GAGGCAACAAGTCAAGGAGGCCGATTGGAGAGGTGTCTACGGAGCCTGTGCCGGTACCCACAGATAGCATGATGAGCAGCCTGGCTCAAGGAGGACCCAAAAACCCTTGCAACTGTAAAGCCAGCAGCTCCAGCTTGATAGGGGGCAGCGGAGCCGGCTGGGAGGGCACAGCTTTGCTTCACCACAGCAGCTGCATCAAAGTGGGATGCTTGCAGTTCCTATTCAGCATAGCGGAGTTTGCTAGCAGCCAACCCAAAAAAGAGGATGCGTCCAGCACCGTTAGCCAAGAAGAGACTCAAGTGGTTGACGTACAAACTCACAAACTCCACCAAATGCCAGTGCTACAGTCTAAGTCTGTATCATAACCCATTCTCTTTTTTATATATATATATATATATATATATATATATAAACTACAATGGACCGTAAGTTTGGAATAGAACATCTTTGATAAAGCGATTAATTCATCCGTTCGTACTGAGGTATTTTGGAGGATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075509-'15-23,'15-22,17-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.430
Domain overlap (PFAM):
C1:
PF0049821=FHA=FE(42.9=100)
A:
PF0049821=FHA=PD(46.0=61.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAAACATGCCTGCATCT
R:
GGAACTGCAAGCATCCCACTT
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]