RnoEX0068611 @ rn6
Exon Skipping
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55970129-55972666:+
Coord C1 exon
chr3:55970129-55970173
Coord A exon
chr3:55971314-55971401
Coord C2 exon
chr3:55972637-55972666
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTCTCTTTATATAGATG
3' ss Score
9.15
5' ss Seq
TATGTATGT
5' ss Score
3.25
Exon sequences
Seq C1 exon
GGAATGGAAGAGGAGGAGAATCAATTTATGGAGGATTCTTTGAAG
Seq A exon
ATGAGAGTTTTGCTGTTAAACACAACAAAGAGTTTCTCTTATCAATGGCCAACAGAGGGAAGGATACAAATGGCTCTCAGTTCTTTAT
Seq C2 exon
AACAACGAAACCAACTCCTCATCTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.178 C2=0.364
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(9.0=100)
A:
PF0016016=Pro_isomerase=FE(17.5=100)
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGAAGAGGAGGAGAATCA
R:
CCATCTAGATGAGGAGTTGGTTTCG
Band lengths:
75-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]