DreEX6019943 @ danRer10
Exon Skipping
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3535987-3538034:+
Coord C1 exon
chr6:3535987-3536031
Coord A exon
chr6:3537686-3537773
Coord C2 exon
chr6:3538005-3538034
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCGTATTCCAGATG
3' ss Score
10.88
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGAATGGCAGAGGTGGTGAATCTATATATGGAGGTTTCTTTGAAG
Seq A exon
ATGAAAGTTTCTCAATGAAACATACCAAGGAGTTCCTGCTATCGATGGCCAACAGAGGGAAAGACACCAACGGCTCACAGTTCTTTAT
Seq C2 exon
AACTACTAAACCAACTCCTCACTTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431-'6-10,'6-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.295 C2=0.364
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(15.2=100)
A:
PF0016016=Pro_isomerase=FE(17.5=100)
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGCAGAGGTGGTGAAT
R:
CCAAGTGAGGAGTTGGTTTAGT
Band lengths:
71-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]