GgaEX6042399 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:18126613-18129217:-
Coord C1 exon
chr7:18129173-18129217
Coord A exon
chr7:18127766-18127853
Coord C2 exon
chr7:18126613-18126642
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTGAAAATACTTGTTTTAGATG
3' ss Score
3.55
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GAAATGGCAGGGGAGGAGAATCCATTTATGGTGGCTTTTTTGAAG
Seq A exon
ATGAAAGCTTTGCTGTAAAGCACAACAAAGAATTTCTTCTTTCAATGGCCAACCGAGGGAAGGATACAAATGGTTCACAGTTCTTTAT
Seq C2 exon
AACTACTAAACCTACACCTCACTTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839-'15-12,'15-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.545
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(9.0=100)
A:
PF0016016=Pro_isomerase=FE(17.5=100)
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCAGGGGAGGAGAATCC
R:
CCATCTAAGTGAGGTGTAGGTTT
Band lengths:
73-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]